Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ser | Not Available | Not Available | Positive | 1955705 - 1955794 | Not Available |
| hypothetical protein | FAP39_09615 | Not Available | Positive | 1956751 - 1957008 | 9506.75 |
| hypothetical protein | FAP39_09620 | Not Available | Negative | 1957149 - 1957469 | 11956.6 |
| sdr family nad(p)-dependent oxidoreductase | FAP39_09625 | Not Available | Negative | 1957463 - 1958125 | 23956.7 |
| tryptophan-rich sensory protein | FAP39_09630 | Not Available | Negative | 1958139 - 1958591 | 16944.2 |
| duf393 domain-containing protein | FAP39_09635 | Not Available | Negative | 1958632 - 1959006 | 14023.8 |
| glutathione peroxidase | FAP39_09640 | Not Available | Negative | 1959030 - 1959551 | 19234.2 |
| nadh ubiquinone oxidoreductase | FAP39_09645 | Not Available | Positive | 1959833 - 1960312 | 17911.0 |
| hypothetical protein | FAP39_09650 | Not Available | Negative | 1960654 - 1961037 | 14488.4 |
| hypothetical protein | FAP39_09825 | Not Available | Positive | 1987189 - 1987512 | 12242.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
