Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase | FAP39_09555 | Not Available | Positive | 1944812 - 1945804 | 34305.2 |
| hit family protein | FAP39_09560 | Not Available | Positive | 1945877 - 1946296 | 15785.1 |
| hypothetical protein | FAP39_09565 | Not Available | Positive | 1946460 - 1946894 | 14768.6 |
| aminotransferase class v-fold plp-dependent enzyme | FAP39_09570 | Not Available | Positive | 1947028 - 1948251 | 44131.4 |
| class i sam-dependent methyltransferase | FAP39_09575 | Not Available | Positive | 1948438 - 1949646 | 46015.4 |
| trga family protein | FAP39_09580 | Not Available | Positive | 1949646 - 1950086 | 15368.3 |
| nudix domain-containing protein | FAP39_09585 | Not Available | Positive | 1950091 - 1951215 | 41514.1 |
| cysteine synthase a | FAP39_09590 | Not Available | Positive | 1951272 - 1952306 | 36243.4 |
| mechanosensitive ion channel family protein | FAP39_09595 | Not Available | Positive | 1952306 - 1954768 | 90532.4 |
| alanyl-trna editing protein | FAP39_09600 | Not Available | Positive | 1954765 - 1955484 | 25867.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
