Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sufe family protein | FAP39_09500 | Not Available | Positive | 1937080 - 1937487 | 15097.9 |
| aryl-sulfate sulfotransferase | FAP39_09505 | Not Available | Negative | 1937510 - 1937740 | 8635.4 |
| duf4169 family protein | FAP39_09510 | Not Available | Negative | 1937737 - 1937913 | 6599.75 |
| class ii fumarate hydratase | FAP39_09515 | Not Available | Negative | 1937913 - 1939304 | 49601.6 |
| hypothetical protein | FAP39_09520 | Not Available | Negative | 1939421 - 1939897 | 18001.0 |
| chromate efflux transporter | FAP39_09525 | Not Available | Negative | 1939981 - 1941243 | 44226.8 |
| nuclear transport factor 2 family protein | FAP39_09530 | Not Available | Negative | 1941298 - 1941723 | 15956.2 |
| fadr family transcriptional regulator | FAP39_09540 | Not Available | Negative | 1942350 - 1943096 | 27336.5 |
| damage-inducible protein dinb | FAP39_09545 | Not Available | Positive | 1943190 - 1943693 | 18707.2 |
| dimethylsulfoniopropionate demethylase | FAP39_09550 | Not Available | Positive | 1943696 - 1944799 | 40991.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
