Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | FAP39_09450 | Not Available | Negative | 1929308 - 1929943 | 22386.2 |
| sigma-70 family rna polymerase sigma factor | FAP39_09455 | Not Available | Negative | 1929944 - 1930459 | 19682.8 |
| Trna-asn | Not Available | Not Available | Positive | 1930825 - 1930899 | Not Available |
| mbl fold metallo-hydrolase | FAP39_09465 | Not Available | Negative | 1930979 - 1931893 | 33013.2 |
| hamp domain-containing protein | FAP39_09470 | Not Available | Positive | 1931934 - 1933247 | 48411.5 |
| Trna-met | Not Available | Not Available | Positive | 1933325 - 1933398 | Not Available |
| phosphoribosylformylglycinamidine cyclo-ligase | FAP39_09480 | Not Available | Positive | 1933575 - 1934621 | 35970.1 |
| phosphoribosylglycinamide formyltransferase | FAP39_09485 | Not Available | Positive | 1934618 - 1935208 | 20829.3 |
| ribonuclease d | FAP39_09490 | Not Available | Positive | 1935301 - 1936458 | 43208.9 |
| hypothetical protein | FAP39_09495 | Not Available | Negative | 1936462 - 1936953 | 17436.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
