Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tfox/sxy family protein | FAP39_09400 | Not Available | Negative | 1920376 - 1920705 | 12077.5 |
| class i sam-dependent methyltransferase | FAP39_09405 | Not Available | Negative | 1920748 - 1921557 | 30908.3 |
| hypothetical protein | FAP39_09410 | Not Available | Negative | 1922049 - 1922756 | 25096.3 |
| duf3833 domain-containing protein | FAP39_09415 | Not Available | Negative | 1922756 - 1923325 | 20507.7 |
| mfs transporter | FAP39_09420 | Not Available | Negative | 1923322 - 1924548 | 42721.2 |
| hypothetical protein | FAP39_09425 | Not Available | Negative | 1924548 - 1925042 | 18140.7 |
| class i sam-dependent methyltransferase | FAP39_09430 | Not Available | Negative | 1925035 - 1926195 | 43419.1 |
| fad-dependent oxidoreductase | FAP39_09435 | Not Available | Negative | 1926143 - 1927474 | 49173.2 |
| duf1365 domain-containing protein | FAP39_09440 | Not Available | Positive | 1927599 - 1928384 | 29496.2 |
| sdr family nad(p)-dependent oxidoreductase | FAP39_09445 | Not Available | Positive | 1928433 - 1929155 | 26375.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
