Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | FAP39_09350 | Not Available | Negative | 1908734 - 1909984 | 45222.9 |
| lps-assembly protein lptd | FAP39_09355 | Not Available | Negative | 1909986 - 1912148 | 80513.5 |
| lps export abc transporter permease lptg | FAP39_09360 | Not Available | Negative | 1912145 - 1913242 | 40107.3 |
| lps export abc transporter permease lptf | FAP39_09365 | Not Available | Negative | 1913239 - 1914369 | 41775.3 |
| leucyl aminopeptidase | FAP39_09370 | Not Available | Positive | 1914500 - 1915975 | 51597.2 |
| dna polymerase iii subunit chi | FAP39_09375 | Not Available | Positive | 1915982 - 1916452 | 17356.5 |
| tigr02281 family clan aa aspartic protease | FAP39_09380 | Not Available | Negative | 1916489 - 1917070 | 21219.8 |
| marc family protein | FAP39_09385 | Not Available | Negative | 1917125 - 1917739 | 21413.0 |
| atp-binding cassette domain-containing protein | FAP39_09390 | Not Available | Negative | 1917773 - 1919620 | 67875.6 |
| nucleoside-diphosphate kinase | FAP39_09395 | Not Available | Positive | 1919907 - 1920329 | 15073.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
