Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside triphosphate pyrophosphohydrolase | FAP39_09300 | Not Available | Negative | 1900028 - 1900846 | 30445.9 |
| amidohydrolase | FAP39_09305 | Not Available | Positive | 1900910 - 1902082 | 41934.4 |
| agmatinase | FAP39_09310 | Not Available | Positive | 1902202 - 1903167 | 34523.6 |
| duf1499 domain-containing protein | FAP39_09315 | Not Available | Positive | 1903340 - 1903780 | 16121.5 |
| hypothetical protein | FAP39_09320 | Not Available | Negative | 1903703 - 1904011 | 10777.3 |
| peptide chain release factor 1 | FAP39_09325 | Not Available | Positive | 1904073 - 1905128 | 38803.9 |
| peptide chain release factor n(5)-glutamine methyltransferase | FAP39_09330 | Not Available | Positive | 1905125 - 1905958 | 30160.3 |
| duf4167 domain-containing protein | FAP39_09335 | Not Available | Positive | 1906176 - 1906796 | 23162.6 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | FAP39_09340 | Not Available | Negative | 1906889 - 1907731 | 30525.2 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | FAP39_09345 | Not Available | Negative | 1907754 - 1908737 | 34143.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
