Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lrp/asnc family transcriptional regulator | FAP39_09200 | Not Available | Positive | 1879538 - 1879963 | 15529.9 |
| disulfide bond formation protein b | FAP39_09205 | Not Available | Negative | 1879968 - 1880447 | 17308.2 |
| deda family protein | FAP39_09210 | Not Available | Negative | 1880444 - 1881022 | 21038.4 |
| Trna-leu | Not Available | Not Available | Positive | 1881287 - 1881372 | Not Available |
| hypothetical protein | FAP39_09220 | Not Available | Positive | 1881560 - 1882693 | 39873.0 |
| peptidoglycan-binding protein | FAP39_09225 | Not Available | Positive | 1882808 - 1884388 | 58580.2 |
| mechanosensitive ion channel | FAP39_09230 | Not Available | Negative | 1884440 - 1886521 | 75876.4 |
| alpha/beta hydrolase | FAP39_09235 | Not Available | Positive | 1886664 - 1888352 | 60799.1 |
| hypothetical protein | FAP39_09240 | Not Available | Positive | 1888516 - 1889304 | 28791.0 |
| nucleotidyltransferase family protein | FAP39_09245 | Not Available | Negative | 1889241 - 1889843 | 21502.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
