Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine--trna ligase | FAP39_09150 | Not Available | Positive | 1868996 - 1870462 | 54403.5 |
| citramalate synthase | FAP39_09155 | Not Available | Positive | 1870459 - 1872087 | 58928.5 |
| alpha/beta fold hydrolase | FAP39_09160 | Not Available | Positive | 1872250 - 1873077 | 29936.0 |
| phytoene synthase | FAP39_09165 | Not Available | Positive | 1873070 - 1873855 | 28887.7 |
| mfs transporter | FAP39_09170 | Not Available | Negative | 1873909 - 1875117 | 41867.8 |
| dna-3-methyladenine glycosylase 2 family protein | FAP39_09175 | Not Available | Positive | 1875211 - 1875843 | 23038.8 |
| alpha/beta fold hydrolase | FAP39_09180 | Not Available | Positive | 1875840 - 1876505 | 23548.0 |
| hnh endonuclease | FAP39_09185 | Not Available | Positive | 1876769 - 1877353 | 22277.6 |
| ornithine cyclodeaminase | FAP39_09190 | Not Available | Negative | 1877363 - 1878412 | 37790.1 |
| arginase | FAP39_09195 | Not Available | Negative | 1878497 - 1879420 | 32973.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
