Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enoyl-acp reductase fabi | FAP39_09095 | Not Available | Negative | 1855832 - 1856650 | 29272.1 |
| pyridoxamine 5'-phosphate oxidase | FAP39_09100 | Not Available | Positive | 1856745 - 1857350 | 22911.0 |
| cold shock domain-containing protein | FAP39_09105 | Not Available | Positive | 1857468 - 1858004 | 19537.9 |
| duf192 domain-containing protein | FAP39_09110 | Not Available | Positive | 1858025 - 1858474 | 16284.7 |
| Trna-pro | Not Available | Not Available | Positive | 1858502 - 1858578 | Not Available |
| vitamin b12-dependent ribonucleotide reductase | FAP39_09120 | Not Available | Positive | 1859186 - 1862869 | 133491.0 |
| site-specific integrase | FAP39_09125 | Not Available | Positive | 1863711 - 1864907 | 46687.6 |
| pyridoxal phosphate-dependent aminotransferase | FAP39_09135 | Not Available | Negative | 1866541 - 1867722 | 42137.4 |
| redox-sensitive transcriptional activator soxr | FAP39_09140 | Not Available | Negative | 1867892 - 1868371 | 17553.1 |
| voc family protein | FAP39_09145 | Not Available | Positive | 1868450 - 1868824 | 13547.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
