Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclic pyranopterin monophosphate synthase moac | FAP39_09045 | Not Available | Negative | 1845023 - 1845511 | 16953.7 |
| indole-3-glycerol phosphate synthase trpc | FAP39_09050 | Not Available | Negative | 1845511 - 1846326 | 29276.9 |
| uracil-dna glycosylase | FAP39_09055 | Not Available | Negative | 1846323 - 1846988 | 24501.1 |
| anthranilate phosphoribosyltransferase | FAP39_09060 | Not Available | Negative | 1846988 - 1848013 | 34966.9 |
| aminodeoxychorismate/anthranilate synthase component ii | FAP39_09065 | Not Available | Negative | 1848010 - 1848591 | 20809.2 |
| divergent polysaccharide deacetylase family protein | FAP39_09070 | Not Available | Positive | 1848764 - 1850137 | 46671.6 |
| anthranilate synthase component i | FAP39_09075 | Not Available | Negative | 1850367 - 1851878 | 54850.5 |
| peptidylprolyl isomerase | FAP39_09080 | Not Available | Negative | 1851900 - 1853741 | 66412.0 |
| aminotransferase | FAP39_09085 | Not Available | Negative | 1853904 - 1855079 | 43000.4 |
| xanthine phosphoribosyltransferase | FAP39_09090 | Not Available | Negative | 1855176 - 1855679 | 18854.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
