Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan-binding protein | FAP39_08990 | Not Available | Positive | 1832311 - 1832922 | 22800.3 |
| carboxylesterase | FAP39_08995 | Not Available | Positive | 1832913 - 1833461 | 20504.8 |
| heme lyase ccmf/nrfe family subunit | FAP39_09000 | Not Available | Positive | 1833540 - 1835513 | 71711.8 |
| cytochrome c-type biogenesis protein ccmh | FAP39_09005 | Not Available | Positive | 1835510 - 1835962 | 16816.6 |
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase | FAP39_09010 | Not Available | Positive | 1836031 - 1836807 | 27869.2 |
| calcium-binding protein | FAP39_09015 | Not Available | Negative | 1836804 - 1837898 | 36900.0 |
| citrate (si)-synthase | FAP39_09020 | Not Available | Negative | 1838101 - 1839396 | 48227.5 |
| glutamate--trna ligase | FAP39_09025 | Not Available | Negative | 1839471 - 1840895 | 52151.9 |
| transcriptional repressor lexa | FAP39_09035 | Not Available | Negative | 1843014 - 1843727 | 25860.1 |
| molybdopterin molybdotransferase moea | FAP39_09040 | Not Available | Negative | 1843851 - 1845026 | 40738.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
