Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| grx4 family monothiol glutaredoxin | FAP39_08940 | Not Available | Negative | 1818321 - 1818683 | 13287.7 |
| bola family transcriptional regulator | FAP39_08945 | Not Available | Negative | 1818911 - 1819147 | 8592.3 |
| phosphoribosylformylglycinamidine synthase subunit purl | FAP39_08950 | Not Available | Negative | 1819287 - 1821452 | 76511.7 |
| mechanosensitive ion channel | FAP39_08955 | Not Available | Negative | 1821643 - 1823934 | 82401.0 |
| lysr family transcriptional regulator | FAP39_08960 | Not Available | Negative | 1824224 - 1825129 | 33963.9 |
| indolepyruvate ferredoxin oxidoreductase family protein | FAP39_08965 | Not Available | Positive | 1825302 - 1828721 | 124140.0 |
| acyltransferase | FAP39_08970 | Not Available | Positive | 1828817 - 1829695 | 32183.2 |
| glutamate racemase | FAP39_08975 | Not Available | Positive | 1829717 - 1830529 | 29380.0 |
| n-acetyl-gamma-glutamyl-phosphate reductase | FAP39_08980 | Not Available | Positive | 1830642 - 1831670 | 37128.6 |
| cytochrome c maturation protein ccme | FAP39_08985 | Not Available | Positive | 1831694 - 1832143 | 16222.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
