Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coa-acylating methylmalonate-semialdehyde dehydrogenase | FAP39_08890 | Not Available | Negative | 1809015 - 1810514 | 53981.3 |
| lysr family transcriptional regulator | FAP39_08895 | Not Available | Positive | 1810617 - 1811513 | 32899.2 |
| cbs domain-containing protein | FAP39_08900 | Not Available | Positive | 1811574 - 1812008 | 15399.8 |
| pantetheine-phosphate adenylyltransferase | FAP39_08905 | Not Available | Positive | 1812113 - 1812610 | 18252.3 |
| duf808 domain-containing protein | FAP39_08910 | Not Available | Positive | 1812823 - 1813806 | 34425.6 |
| hypothetical protein | FAP39_08915 | Not Available | Negative | 1813816 - 1814343 | 19806.3 |
| transketolase | FAP39_08920 | Not Available | Negative | 1814412 - 1816430 | 72700.8 |
| hypothetical protein | FAP39_08925 | Not Available | Positive | 1816657 - 1817415 | 27103.3 |
| cell division protein zapa | FAP39_08930 | Not Available | Positive | 1817415 - 1817801 | 13635.3 |
| hypothetical protein | FAP39_08935 | Not Available | Negative | 1817802 - 1818311 | 18121.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
