Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrolipoyl dehydrogenase | FAP39_08840 | Not Available | Positive | 1798068 - 1799462 | 49248.9 |
| class i sam-dependent methyltransferase | FAP39_08845 | Not Available | Positive | 1799472 - 1800032 | 21561.9 |
| sulfurtransferase | FAP39_08850 | Not Available | Negative | 1800039 - 1800398 | 12980.5 |
| excinuclease abc subunit uvra | FAP39_08855 | Not Available | Positive | 1800569 - 1803430 | 105751.0 |
| 3-hydroxyisobutyrate dehydrogenase | FAP39_08860 | Not Available | Negative | 1803506 - 1804378 | 29463.2 |
| enoyl-coa hydratase/isomerase family protein | FAP39_08865 | Not Available | Negative | 1804382 - 1805428 | 38211.8 |
| acyl-coa dehydrogenase | FAP39_08870 | Not Available | Negative | 1805442 - 1806587 | 41309.1 |
| carboxylate-amine ligase | FAP39_08875 | Not Available | Negative | 1806685 - 1807818 | 42761.8 |
| hypothetical protein | FAP39_08880 | Not Available | Positive | 1807992 - 1808438 | 16113.7 |
| hypothetical protein | FAP39_08885 | Not Available | Negative | 1808520 - 1808939 | 15379.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
