Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3179 domain-containing protein | FAP39_08790 | Not Available | Positive | 1786799 - 1787734 | 34724.1 |
| hypothetical protein | FAP39_08795 | Not Available | Positive | 1787813 - 1788106 | 9882.07 |
| polymer-forming cytoskeletal protein | FAP39_08800 | Not Available | Negative | 1788214 - 1788720 | 17250.7 |
| m23 family peptidase | FAP39_08805 | Not Available | Negative | 1788710 - 1789954 | 46193.2 |
| ferritin-like domain-containing protein | FAP39_08810 | Not Available | Negative | 1790182 - 1791009 | 30492.2 |
| peroxiredoxin | FAP39_08815 | Not Available | Negative | 1791006 - 1791470 | 16711.1 |
| duf3971 domain-containing protein | FAP39_08820 | Not Available | Positive | 1791592 - 1794861 | 117456.0 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | FAP39_08825 | Not Available | Positive | 1794867 - 1795913 | 37974.3 |
| mfs transporter | FAP39_08830 | Not Available | Positive | 1796016 - 1797281 | 44399.1 |
| duf924 domain-containing protein | FAP39_08835 | Not Available | Positive | 1797383 - 1797961 | 22134.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
