Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_08640 | Not Available | Positive | 1758718 - 1759044 | 11906.2 |
| pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alpha | FAP39_08745 | Not Available | Negative | 1776965 - 1777963 | 36480.4 |
| septum formation initiator family protein | FAP39_08750 | Not Available | Negative | 1778087 - 1778389 | 11475.7 |
| arac family transcriptional regulator | FAP39_08755 | Not Available | Negative | 1778719 - 1779615 | 33368.1 |
| duf1254 domain-containing protein | FAP39_08760 | Not Available | Positive | 1779907 - 1781430 | 56285.0 |
| duf1254 domain-containing protein | FAP39_08765 | Not Available | Positive | 1781457 - 1782959 | 54759.7 |
| fructose bisphosphate aldolase | FAP39_08770 | Not Available | Negative | 1783213 - 1784106 | 31786.9 |
| phosphoglycerate kinase | FAP39_08775 | Not Available | Negative | 1784277 - 1785467 | 41060.5 |
| peptidylprolyl isomerase | FAP39_08780 | Not Available | Positive | 1785596 - 1786108 | 18432.7 |
| peptidylprolyl isomerase | FAP39_08785 | Not Available | Positive | 1786101 - 1786649 | 19213.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
