Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s6 | FAP39_08590 | Not Available | Negative | 1749564 - 1749917 | 13599.2 |
| hypothetical protein | FAP39_08595 | Not Available | Positive | 1750184 - 1750678 | 17920.0 |
| ycei family protein | FAP39_08600 | Not Available | Positive | 1750785 - 1751357 | 20479.2 |
| cytochrome | FAP39_08605 | Not Available | Negative | 1751432 - 1752646 | 43086.6 |
| acp s-malonyltransferase | FAP39_08610 | Not Available | Positive | 1752804 - 1753742 | 31876.2 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | FAP39_08615 | Not Available | Positive | 1753752 - 1754489 | 25407.8 |
| acyl carrier protein | FAP39_08620 | Not Available | Positive | 1754740 - 1754973 | 8407.7 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | FAP39_08625 | Not Available | Positive | 1755167 - 1755910 | 26830.0 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | FAP39_08630 | Not Available | Positive | 1756062 - 1757321 | 43636.6 |
| endolytic transglycosylase mltg | FAP39_08635 | Not Available | Positive | 1757321 - 1758472 | 41713.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
