Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter | FAP39_08535 | Not Available | Positive | 1738876 - 1739100 | 8020.88 |
| hemolysin | FAP39_08545 | Not Available | Negative | 1740042 - 1741469 | 51151.7 |
| porin | FAP39_08550 | Not Available | Positive | 1742042 - 1743136 | 39498.9 |
| porin | FAP39_08555 | Not Available | Positive | 1743274 - 1744446 | 42115.1 |
| trigger factor | FAP39_08560 | Not Available | Positive | 1744574 - 1745908 | 49318.0 |
| aquaporin z | FAP39_08565 | Not Available | Positive | 1746145 - 1746834 | 23334.8 |
| hlyd family secretion protein | FAP39_08570 | Not Available | Negative | 1746906 - 1748138 | 44950.0 |
| hypothetical protein | FAP39_08575 | Not Available | Negative | 1748131 - 1748526 | 14217.4 |
| 50s ribosomal protein l9 | FAP39_08580 | Not Available | Negative | 1748672 - 1749295 | 21802.5 |
| 30s ribosomal protein s18 | FAP39_08585 | Not Available | Negative | 1749308 - 1749535 | 8609.71 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
