Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | FAP39_08430 | Not Available | Negative | 1715622 - 1716479 | 31529.4 |
| abc transporter permease | FAP39_08435 | Not Available | Negative | 1716493 - 1717350 | 31803.2 |
| abc transporter atp-binding protein | FAP39_08440 | Not Available | Negative | 1717351 - 1718451 | 39843.9 |
| extracellular solute-binding protein | FAP39_08445 | Not Available | Negative | 1718515 - 1719585 | 37542.7 |
| iron-containing alcohol dehydrogenase | FAP39_08450 | Not Available | Negative | 1719843 - 1720988 | 40362.0 |
| aldehyde dehydrogenase family protein | FAP39_08455 | Not Available | Negative | 1720993 - 1722366 | 49356.9 |
| glutamine synthetase | FAP39_08460 | Not Available | Negative | 1722370 - 1723734 | 51425.5 |
| twin-arginine translocation signal domain-containing protein | FAP39_08465 | Not Available | Negative | 1723793 - 1724827 | 38724.6 |
| trap transporter large permease subunit | FAP39_08470 | Not Available | Negative | 1724875 - 1726203 | 48548.1 |
| trap transporter small permease subunit | FAP39_08475 | Not Available | Negative | 1726203 - 1726772 | 21472.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
