Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 4 protein | FAP39_08375 | Not Available | Negative | 1701478 - 1702557 | 39046.6 |
| glycosyltransferase family 4 protein | FAP39_08380 | Not Available | Negative | 1702561 - 1703799 | 46135.9 |
| hypothetical protein | FAP39_08385 | Not Available | Negative | 1703796 - 1705016 | 44120.6 |
| mechanosensitive ion channel | FAP39_08390 | Not Available | Positive | 1705365 - 1707734 | 87171.7 |
| abc transporter permease | FAP39_08395 | Not Available | Negative | 1707810 - 1708961 | 42476.9 |
| abc transporter permease | FAP39_08400 | Not Available | Negative | 1708958 - 1709986 | 37354.8 |
| abc transporter substrate-binding protein | FAP39_08405 | Not Available | Negative | 1709999 - 1711888 | 71167.5 |
| abc transporter atp-binding protein | FAP39_08410 | Not Available | Negative | 1711881 - 1713653 | 64092.6 |
| hypothetical protein | FAP39_08415 | Not Available | Positive | 1713904 - 1714395 | 18074.9 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | FAP39_08420 | Not Available | Positive | 1714506 - 1715105 | 21434.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
