Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_08325 | Not Available | Positive | 1691806 - 1692639 | 30778.5 |
| endonuclease/exonuclease/phosphatase family protein | FAP39_08330 | Not Available | Positive | 1692519 - 1693679 | 42876.1 |
| epimerase | FAP39_08335 | Not Available | Negative | 1693676 - 1694554 | 32823.5 |
| lysr family transcriptional regulator | FAP39_08340 | Not Available | Positive | 1694648 - 1695541 | 33338.3 |
| 3-isopropylmalate dehydrogenase | FAP39_08345 | Not Available | Positive | 1695600 - 1696706 | 39368.9 |
| peptidase u32 | FAP39_08350 | Not Available | Positive | 1696857 - 1698512 | 62876.8 |
| hypothetical protein | FAP39_08355 | Not Available | Negative | 1698515 - 1698991 | 17509.1 |
| polysaccharide deacetylase | FAP39_08360 | Not Available | Negative | 1698991 - 1699761 | 29194.0 |
| glycosyltransferase | FAP39_08365 | Not Available | Negative | 1699758 - 1700897 | 40137.1 |
| histidine phosphatase family protein | FAP39_08370 | Not Available | Negative | 1700894 - 1701481 | 21923.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
