Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plp-dependent aminotransferase family protein | FAP39_08225 | Not Available | Negative | 1671832 - 1673043 | 43655.4 |
| fcd domain-containing protein | FAP39_08230 | Not Available | Positive | 1673202 - 1673969 | 29234.9 |
| nad(p)h-quinone oxidoreductase | FAP39_08235 | Not Available | Positive | 1674013 - 1674996 | 34468.6 |
| coq9 family protein | FAP39_08240 | Not Available | Negative | 1675047 - 1675733 | 25085.8 |
| 30s ribosomal protein s21 | FAP39_08245 | Not Available | Positive | 1675843 - 1676049 | 8131.13 |
| glutathione-dependent disulfide-bond oxidoreductase | FAP39_08250 | Not Available | Positive | 1676274 - 1677146 | 32552.2 |
| nad-dependent succinate-semialdehyde dehydrogenase | FAP39_08255 | Not Available | Positive | 1677299 - 1678771 | 52263.6 |
| hypothetical protein | FAP39_08260 | Not Available | Negative | 1678768 - 1679193 | 15826.9 |
| hsp20 family protein | FAP39_08265 | Not Available | Negative | 1679341 - 1679808 | 17349.5 |
| trypsin-like serine protease | FAP39_08270 | Not Available | Negative | 1679971 - 1680783 | 28902.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
