Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione s-transferase family protein | FAP39_08125 | Not Available | Positive | 1651023 - 1651997 | 37196.3 |
| response regulator | FAP39_08130 | Not Available | Negative | 1652036 - 1652425 | 14163.8 |
| pyridoxal phosphate-dependent class ii aminotransferase | FAP39_08135 | Not Available | Positive | 1652600 - 1653556 | 34174.4 |
| cobalamin biosynthesis protein | FAP39_08140 | Not Available | Positive | 1653553 - 1654461 | 33059.6 |
| lytic murein transglycosylase | FAP39_08145 | Not Available | Positive | 1654523 - 1655692 | 42840.5 |
| hypothetical protein | FAP39_08150 | Not Available | Negative | 1655738 - 1656088 | 12894.2 |
| upf0261 family protein | FAP39_08155 | Not Available | Negative | 1656154 - 1657395 | 43568.7 |
| aldehyde dehydrogenase | FAP39_08160 | Not Available | Negative | 1657422 - 1658906 | 51984.4 |
| hypothetical protein | FAP39_08165 | Not Available | Negative | 1658912 - 1660429 | 53900.9 |
| tripartite tricarboxylate transporter tctb family protein | FAP39_08170 | Not Available | Negative | 1660442 - 1660981 | 20266.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
