Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | FAP39_08075 | Not Available | Positive | 1644334 - 1645284 | 34365.4 |
| lyse family translocator | FAP39_08080 | Not Available | Positive | 1645298 - 1645909 | 21581.1 |
| methyltransferase domain-containing protein | FAP39_08085 | Not Available | Positive | 1645906 - 1646496 | 21153.1 |
| ribonuclease hi | FAP39_08090 | Not Available | Positive | 1646489 - 1646941 | 16413.6 |
| hypothetical protein | FAP39_08095 | Not Available | Negative | 1646962 - 1647198 | 8394.5 |
| methionyl-trna formyltransferase | FAP39_08100 | Not Available | Negative | 1647220 - 1648131 | 31810.6 |
| peptide deformylase | FAP39_08105 | Not Available | Negative | 1648128 - 1648622 | 18616.6 |
| peptide deformylase | FAP39_08110 | Not Available | Negative | 1648672 - 1649187 | 19213.4 |
| pyridoxal phosphate-dependent aminotransferase | FAP39_08115 | Not Available | Positive | 1649288 - 1650460 | 43201.4 |
| hypothetical protein | FAP39_08120 | Not Available | Negative | 1650499 - 1650852 | 13178.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
