Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2478 domain-containing protein | FAP39_07975 | Not Available | Positive | 1628296 - 1628805 | 18632.2 |
| ai-2e family transporter | FAP39_07980 | Not Available | Negative | 1628802 - 1629905 | 39920.0 |
| sulfite exporter taue/safe family protein | FAP39_07985 | Not Available | Negative | 1630014 - 1630781 | 26461.7 |
| acyl-coa dehydrogenase | FAP39_07990 | Not Available | Positive | 1630916 - 1632607 | 61142.4 |
| tetr/acrr family transcriptional regulator | FAP39_07995 | Not Available | Positive | 1632748 - 1633299 | 20041.7 |
| meta domain-containing protein | FAP39_08000 | Not Available | Positive | 1633303 - 1633704 | 14101.0 |
| dna repair protein reco | FAP39_08005 | Not Available | Negative | 1633679 - 1634410 | 26697.1 |
| duf1491 family protein | FAP39_08010 | Not Available | Negative | 1634500 - 1634832 | 12164.5 |
| gtpase era | FAP39_08015 | Not Available | Negative | 1634829 - 1635734 | 33775.0 |
| ribonuclease iii | FAP39_08020 | Not Available | Negative | 1635731 - 1636414 | 24803.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
