Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid abc transporter permease | FAP39_07925 | Not Available | Negative | 1620360 - 1621457 | 39965.3 |
| branched-chain amino acid abc transporter permease | FAP39_07930 | Not Available | Negative | 1621462 - 1622337 | 30849.8 |
| zinc-binding dehydrogenase | FAP39_07935 | Not Available | Negative | 1622417 - 1623451 | 36475.1 |
| tetr/acrr family transcriptional regulator | FAP39_07940 | Not Available | Negative | 1623448 - 1624158 | 27048.4 |
| translation initiation factor if-1 | FAP39_07945 | Not Available | Positive | 1624488 - 1624706 | 8286.14 |
| septum formation protein maf | FAP39_07950 | Not Available | Positive | 1624752 - 1625330 | 20794.2 |
| ribonuclease g | FAP39_07955 | Not Available | Positive | 1625327 - 1626349 | 36691.0 |
| dna gyrase inhibitor yacg | FAP39_07960 | Not Available | Positive | 1626346 - 1626537 | 7193.35 |
| putative 2-aminoethylphosphonate abc transporter substrate-binding protein | FAP39_07965 | Not Available | Negative | 1626586 - 1627578 | 35470.8 |
| two pore domain potassium channel family protein | FAP39_07970 | Not Available | Positive | 1627797 - 1628255 | 16444.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
