Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f0f1 atp synthase subunit beta | FAP39_07875 | Not Available | Negative | 1608415 - 1609839 | 50298.0 |
| f0f1 atp synthase subunit gamma | FAP39_07880 | Not Available | Negative | 1609861 - 1610736 | 31454.6 |
| f0f1 atp synthase subunit alpha | FAP39_07885 | Not Available | Negative | 1610749 - 1612287 | 54957.8 |
| f0f1 atp synthase subunit delta | FAP39_07890 | Not Available | Negative | 1612287 - 1612847 | 19629.1 |
| acyl-coa dehydrogenase | FAP39_07895 | Not Available | Negative | 1613305 - 1614411 | 38899.4 |
| acyl-coa dehydrogenase | FAP39_07900 | Not Available | Negative | 1614416 - 1615594 | 43311.2 |
| branched-chain amino acid abc transporter substrate-binding protein | FAP39_07905 | Not Available | Negative | 1615657 - 1616817 | 41257.1 |
| long-chain fatty acid--coa ligase | FAP39_07910 | Not Available | Negative | 1616940 - 1618823 | 70693.5 |
| abc transporter atp-binding protein | FAP39_07915 | Not Available | Negative | 1618829 - 1619602 | 28844.2 |
| abc transporter atp-binding protein | FAP39_07920 | Not Available | Negative | 1619599 - 1620363 | 28066.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
