Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family hydrolase | FAP39_07825 | Not Available | Positive | 1601318 - 1602193 | 31412.3 |
| maoc family dehydratase | FAP39_07830 | Not Available | Positive | 1602298 - 1602732 | 15832.2 |
| bifunctional riboflavin kinase/fad synthetase | FAP39_07835 | Not Available | Positive | 1602883 - 1603815 | 33698.2 |
| ycgn family cysteine cluster protein | FAP39_07840 | Not Available | Positive | 1603812 - 1604288 | 18273.5 |
| low specificity l-threonine aldolase | FAP39_07845 | Not Available | Positive | 1604288 - 1605343 | 38001.1 |
| 2-hydroxychromene-2-carboxylate isomerase | FAP39_07850 | Not Available | Negative | 1605410 - 1606009 | 21649.5 |
| ribose-phosphate pyrophosphokinase | FAP39_07855 | Not Available | Positive | 1606127 - 1607140 | 36955.8 |
| hypothetical protein | FAP39_07860 | Not Available | Positive | 1607320 - 1607499 | 6544.71 |
| hypothetical protein | FAP39_07865 | Not Available | Negative | 1607548 - 1607898 | 13200.5 |
| f0f1 atp synthase subunit epsilon | FAP39_07870 | Not Available | Negative | 1608008 - 1608403 | 13702.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
