Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| replication-associated recombination protein a | FAP39_07775 | Not Available | Negative | 1592319 - 1593629 | 48220.5 |
| pdz domain-containing protein | FAP39_07780 | Not Available | Negative | 1593633 - 1595015 | 48199.1 |
| 50s ribosomal protein l17 | FAP39_07785 | Not Available | Negative | 1595142 - 1595561 | 15802.3 |
| dna-directed rna polymerase subunit alpha | FAP39_07790 | Not Available | Negative | 1595697 - 1596713 | 37101.2 |
| 30s ribosomal protein s11 | FAP39_07795 | Not Available | Negative | 1596827 - 1597216 | 13850.6 |
| 30s ribosomal protein s13 | FAP39_07800 | Not Available | Negative | 1597233 - 1597601 | 13537.5 |
| hypothetical protein | FAP39_07805 | Not Available | Negative | 1597851 - 1598252 | 15168.0 |
| adenylate kinase | FAP39_07810 | Not Available | Negative | 1598376 - 1599017 | 22864.3 |
| preprotein translocase subunit secy | FAP39_07815 | Not Available | Negative | 1599014 - 1600378 | 49097.2 |
| 50s ribosomal protein l15 | FAP39_07820 | Not Available | Negative | 1600483 - 1600956 | 16594.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
