Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin | FAP39_07725 | Not Available | Positive | 1583514 - 1584170 | 23809.2 |
| histidine phosphatase family protein | FAP39_07730 | Not Available | Positive | 1584160 - 1584660 | 18746.3 |
| amino acid abc transporter atp-binding protein | FAP39_07735 | Not Available | Negative | 1584707 - 1585498 | 29916.1 |
| abc transporter permease subunit | FAP39_07740 | Not Available | Negative | 1585510 - 1586817 | 47326.1 |
| abc transporter permease subunit | FAP39_07745 | Not Available | Negative | 1586819 - 1588087 | 46709.4 |
| amino acid abc transporter substrate-binding protein | FAP39_07750 | Not Available | Negative | 1588204 - 1589220 | 35531.8 |
| atpase | FAP39_07755 | Not Available | Negative | 1589426 - 1590139 | 26513.3 |
| had family hydrolase | FAP39_07760 | Not Available | Negative | 1590141 - 1590818 | 23508.1 |
| rlua family pseudouridine synthase | FAP39_07765 | Not Available | Negative | 1590815 - 1591858 | 38976.0 |
| fluoride efflux transporter crcb | FAP39_07770 | Not Available | Negative | 1591855 - 1592232 | 12864.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
