Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage major capsid protein | FAP39_07615 | Not Available | Negative | 1559372 - 1561243 | 66088.5 |
| hypothetical protein | FAP39_07620 | Not Available | Negative | 1561246 - 1561983 | 26055.7 |
| is3 family transposase | FAP39_07630 | Not Available | Negative | 1563590 - 1564941 | 51957.8 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | FAP39_07635 | Not Available | Negative | 1565328 - 1566374 | 39408.3 |
| duf3604 domain-containing protein | FAP39_07640 | Not Available | Positive | 1566717 - 1568642 | 71450.8 |
| Trna-arg | Not Available | Not Available | Positive | 1570306 - 1570382 | Not Available |
| hamp domain-containing histidine kinase | FAP39_07655 | Not Available | Negative | 1570443 - 1571831 | 50495.5 |
| dihydrolipoamide dehydrogenase | FAP39_07660 | Not Available | Negative | 1571865 - 1573286 | 50518.3 |
| tvp38/tmem64 family protein | FAP39_07665 | Not Available | Negative | 1573283 - 1574014 | 25531.9 |
| 50s ribosomal protein l34 | FAP39_07670 | Not Available | Positive | 1574291 - 1574425 | 5125.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
