Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | FAP39_07560 | Not Available | Positive | 1550643 - 1551524 | 31464.5 |
| dmt family transporter | FAP39_07565 | Not Available | Positive | 1551547 - 1552461 | 32389.4 |
| atpase | FAP39_07570 | Not Available | Positive | 1552573 - 1553433 | 32409.3 |
| homoserine o-succinyltransferase | FAP39_07575 | Not Available | Positive | 1553481 - 1554404 | 35225.9 |
| alpha/beta hydrolase | FAP39_07580 | Not Available | Positive | 1554406 - 1555347 | 33868.0 |
| polyphosphate kinase 2 | FAP39_07585 | Not Available | Positive | 1555390 - 1556259 | 33730.9 |
| tetr/acrr family transcriptional regulator | FAP39_07590 | Not Available | Positive | 1556252 - 1556869 | 22305.5 |
| hypothetical protein | FAP39_07600 | Not Available | Positive | 1557396 - 1557683 | 11200.0 |
| integrase | FAP39_07605 | Not Available | Negative | 1557901 - 1559028 | 42746.1 |
| hypothetical protein | FAP39_07610 | Not Available | Positive | 1559152 - 1559178 | 1025.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
