Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system rata family toxin | FAP39_07510 | Not Available | Negative | 1542029 - 1542475 | 16892.2 |
| hypoxanthine phosphoribosyltransferase | FAP39_07515 | Not Available | Positive | 1542545 - 1543084 | 20253.3 |
| hypothetical protein | FAP39_07520 | Not Available | Positive | 1543081 - 1543263 | 7106.04 |
| lipoyl synthase | FAP39_07525 | Not Available | Negative | 1543279 - 1544229 | 35203.1 |
| peroxiredoxin | FAP39_07530 | Not Available | Positive | 1544418 - 1544963 | 19896.4 |
| helix-turn-helix domain containing protein | FAP39_07535 | Not Available | Negative | 1545120 - 1546205 | 39971.9 |
| hypothetical protein | FAP39_07540 | Not Available | Positive | 1546463 - 1546756 | 10974.5 |
| trimethylamine methyltransferase | FAP39_07545 | Not Available | Negative | 1546753 - 1548297 | 55805.5 |
| glutamine-hydrolyzing gmp synthase | FAP39_07550 | Not Available | Positive | 1548538 - 1550097 | 57408.4 |
| hypothetical protein | FAP39_07555 | Not Available | Positive | 1550260 - 1550646 | 13806.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
