Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porphobilinogen synthase | FAP39_07410 | Not Available | Positive | 1518925 - 1519926 | 35952.9 |
| twin-arginine translocation pathway signal | FAP39_07415 | Not Available | Positive | 1520054 - 1520614 | 19396.0 |
| nad(p)-dependent oxidoreductase | FAP39_07420 | Not Available | Negative | 1520700 - 1521572 | 30709.5 |
| penicillin acylase family protein | FAP39_07425 | Not Available | Positive | 1521654 - 1524116 | 90442.7 |
| gtpase hflx | FAP39_07430 | Not Available | Negative | 1524131 - 1525402 | 47231.5 |
| rna chaperone hfq | FAP39_07435 | Not Available | Negative | 1525402 - 1525641 | 8948.85 |
| trkh family potassium uptake protein | FAP39_07440 | Not Available | Negative | 1525770 - 1527290 | 54302.8 |
| trk system potassium transporter trka | FAP39_07445 | Not Available | Negative | 1527294 - 1528670 | 49954.1 |
| hypothetical protein | FAP39_07450 | Not Available | Positive | 1528791 - 1529258 | 16476.8 |
| hypothetical protein | FAP39_07455 | Not Available | Positive | 1529310 - 1529747 | 15746.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
