Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pa0069 family radical sam protein | FAP39_07360 | Not Available | Negative | 1507503 - 1508588 | 40139.4 |
| cobalamin-binding protein | FAP39_07365 | Not Available | Positive | 1508794 - 1509492 | 25057.4 |
| duf1638 domain-containing protein | FAP39_07370 | Not Available | Positive | 1509668 - 1510318 | 24307.9 |
| helix-turn-helix domain-containing protein | FAP39_07375 | Not Available | Negative | 1510332 - 1510955 | 23286.7 |
| acyl--coa ligase | FAP39_07380 | Not Available | Positive | 1511022 - 1512542 | 54609.3 |
| dsba family oxidoreductase | FAP39_07385 | Not Available | Positive | 1512539 - 1513180 | 23632.2 |
| two pore domain potassium channel family protein | FAP39_07390 | Not Available | Positive | 1513177 - 1513539 | 13053.8 |
| multidrug effflux mfs transporter | FAP39_07395 | Not Available | Positive | 1513536 - 1514753 | 43647.2 |
| transcription-repair coupling factor | FAP39_07400 | Not Available | Negative | 1514813 - 1518271 | 127237.0 |
| component of sufbcd complex | FAP39_07405 | Not Available | Negative | 1518285 - 1518809 | 19889.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
