Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rne/rng family ribonuclease | FAP39_07310 | Not Available | Negative | 1496212 - 1499331 | 112942.0 |
| hypothetical protein | FAP39_07315 | Not Available | Negative | 1499783 - 1500463 | 24100.3 |
| sigma-54-dependent fis family transcriptional regulator | FAP39_07320 | Not Available | Negative | 1500479 - 1501816 | 49138.4 |
| sensor histidine kinase | FAP39_07325 | Not Available | Negative | 1501820 - 1503583 | 64681.4 |
| phosphoribosylformylglycinamidine synthase subunit purq | FAP39_07330 | Not Available | Negative | 1503621 - 1504289 | 23560.0 |
| phosphoribosylformylglycinamidine synthase subunit purs | FAP39_07335 | Not Available | Negative | 1504286 - 1504519 | 8341.14 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | FAP39_07340 | Not Available | Negative | 1504610 - 1505365 | 28005.8 |
| duf1476 domain-containing protein | FAP39_07345 | Not Available | Positive | 1505522 - 1505836 | 11647.6 |
| betaine--homocysteine s-methyltransferase | FAP39_07350 | Not Available | Positive | 1506033 - 1507049 | 35816.4 |
| hypothetical protein | FAP39_07355 | Not Available | Positive | 1507240 - 1507506 | 9669.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
