Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| kinase | FAP39_07260 | Not Available | Positive | 1486664 - 1487557 | 31252.3 |
| pseudouridine-5'-phosphate glycosidase | FAP39_07265 | Not Available | Positive | 1487554 - 1488477 | 31722.3 |
| duf502 domain-containing protein | FAP39_07270 | Not Available | Positive | 1488549 - 1489235 | 24874.7 |
| 3-hydroxybutyrate dehydrogenase | FAP39_07275 | Not Available | Negative | 1489303 - 1490076 | 27057.3 |
| abc transporter substrate-binding protein | FAP39_07280 | Not Available | Positive | 1490472 - 1492193 | 63939.4 |
| entericidin | FAP39_07285 | Not Available | Positive | 1492190 - 1492306 | 3839.67 |
| cytochrome p450 | FAP39_07290 | Not Available | Negative | 1492330 - 1493706 | 52191.0 |
| hypothetical protein | FAP39_07295 | Not Available | Negative | 1493703 - 1494914 | 44913.0 |
| cytochrome c biogenesis protein ccda | FAP39_07300 | Not Available | Negative | 1495023 - 1495775 | 26460.3 |
| sulfurtransferase tusa family protein | FAP39_07305 | Not Available | Positive | 1495868 - 1496092 | 8117.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
