Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-6-phosphate dehydrogenase | FAP39_07210 | Not Available | Negative | 1474442 - 1475920 | 55487.4 |
| radical sam protein | FAP39_07215 | Not Available | Positive | 1476058 - 1476999 | 34678.2 |
| dna gyrase subunit a | FAP39_07220 | Not Available | Positive | 1477213 - 1479951 | 101060.0 |
| carboxypeptidase m32 | FAP39_07225 | Not Available | Negative | 1480088 - 1481563 | 54807.4 |
| heme a synthase | FAP39_07230 | Not Available | Negative | 1481567 - 1482712 | 42538.5 |
| rna methyltransferase | FAP39_07235 | Not Available | Negative | 1482781 - 1483527 | 27739.4 |
| tfox/sxy family protein | FAP39_07240 | Not Available | Positive | 1483660 - 1483989 | 11675.3 |
| thiamine phosphate synthase | FAP39_07245 | Not Available | Positive | 1484046 - 1484666 | 22268.2 |
| hupe/urej family protein | FAP39_07250 | Not Available | Negative | 1484663 - 1485784 | 40338.2 |
| duf4198 domain-containing protein | FAP39_07255 | Not Available | Positive | 1485825 - 1486616 | 29203.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
