Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine--trna ligase | FAP39_07155 | Not Available | Negative | 1459378 - 1462050 | 96742.6 |
| hypothetical protein | FAP39_07160 | Not Available | Negative | 1462149 - 1462658 | 18685.6 |
| recombinase reca | FAP39_07165 | Not Available | Negative | 1462710 - 1463786 | 38420.2 |
| gamma-glutamyl kinase | FAP39_07170 | Not Available | Positive | 1463980 - 1464576 | 22926.6 |
| rsmb/nop family class i sam-dependent rna methyltransferase | FAP39_07180 | Not Available | Negative | 1466980 - 1468140 | 41227.7 |
| imp dehydrogenase | FAP39_07185 | Not Available | Negative | 1468140 - 1469588 | 50412.7 |
| duf4445 domain-containing protein | FAP39_07190 | Not Available | Positive | 1469898 - 1471946 | 73142.2 |
| Trna-gly | Not Available | Not Available | Positive | 1472060 - 1472133 | Not Available |
| glucose-6-phosphate isomerase | FAP39_07200 | Not Available | Negative | 1472139 - 1473770 | 58868.7 |
| 6-phosphogluconolactonase | FAP39_07205 | Not Available | Negative | 1473774 - 1474445 | 24210.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
