Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chat domain-containing protein | FAP39_07005 | Not Available | Negative | 1425914 - 1432645 | 247763.0 |
| alpha/beta hydrolase | FAP39_07010 | Not Available | Negative | 1432699 - 1434354 | 59991.3 |
| hypothetical protein | FAP39_07015 | Not Available | Negative | 1434935 - 1435381 | 15895.9 |
| hypothetical protein | FAP39_07020 | Not Available | Negative | 1435597 - 1437003 | 48545.0 |
| hypothetical protein | FAP39_07025 | Not Available | Negative | 1437187 - 1437399 | 7536.98 |
| hypothetical protein | FAP39_07030 | Not Available | Negative | 1437399 - 1437659 | 9276.03 |
| hsp70 family protein | FAP39_07035 | Not Available | Negative | 1438029 - 1439279 | 44656.2 |
| smp-30/gluconolactonase/lre family protein | FAP39_07040 | Not Available | Negative | 1439437 - 1440522 | 38255.2 |
| hypothetical protein | FAP39_07045 | Not Available | Positive | 1440786 - 1441388 | 22385.8 |
| Trna-arg | Not Available | Not Available | Positive | 1441728 - 1441804 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
