Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_06955 | Not Available | Positive | 1414975 - 1415493 | 19446.0 |
| branched-chain amino acid abc transporter permease | FAP39_06960 | Not Available | Positive | 1415584 - 1416594 | 36665.1 |
| branched-chain amino acid abc transporter permease | FAP39_06965 | Not Available | Positive | 1416603 - 1417892 | 45566.3 |
| duf853 family protein | FAP39_06970 | Not Available | Negative | 1417976 - 1419523 | 56395.9 |
| invasion associated locus b family protein | FAP39_06975 | Not Available | Positive | 1419989 - 1420570 | 20199.4 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | FAP39_06980 | Not Available | Negative | 1420656 - 1421864 | 42262.5 |
| acyl carrier protein | FAP39_06985 | Not Available | Negative | 1421904 - 1422161 | 9103.66 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | FAP39_06990 | Not Available | Negative | 1422192 - 1423283 | 37776.4 |
| murein l,d-transpeptidase | FAP39_06995 | Not Available | Negative | 1423311 - 1424930 | 60349.1 |
| duf882 domain-containing protein | FAP39_07000 | Not Available | Positive | 1425251 - 1425820 | 21085.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
