Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| guanylate kinase | FAP39_06905 | Not Available | Negative | 1405101 - 1405742 | 24221.4 |
| yicc family protein | FAP39_06910 | Not Available | Negative | 1405748 - 1406626 | 31704.8 |
| pas domain-containing protein | FAP39_06915 | Not Available | Positive | 1406796 - 1407572 | 28670.7 |
| 3-deoxy-7-phosphoheptulonate synthase class ii | FAP39_06920 | Not Available | Negative | 1407672 - 1409039 | 49867.1 |
| glxa family transcriptional regulator | FAP39_06925 | Not Available | Positive | 1409197 - 1410204 | 37718.1 |
| hypothetical protein | FAP39_06930 | Not Available | Negative | 1410280 - 1410777 | 18776.5 |
| pqq-dependent sugar dehydrogenase | FAP39_06935 | Not Available | Negative | 1410785 - 1411882 | 39664.3 |
| branched-chain amino acid abc transporter substrate-binding protein | FAP39_06940 | Not Available | Positive | 1412042 - 1413226 | 39244.5 |
| abc transporter atp-binding protein | FAP39_06945 | Not Available | Positive | 1413320 - 1414102 | 28359.5 |
| abc transporter atp-binding protein | FAP39_06950 | Not Available | Positive | 1414240 - 1414971 | 26282.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
