Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ai-2e family transporter | FAP39_06855 | Not Available | Positive | 1394903 - 1395702 | 28374.7 |
| fad-binding oxidoreductase | FAP39_06860 | Not Available | Negative | 1395699 - 1396961 | 45343.2 |
| phosphate regulon transcriptional regulatory protein phob | FAP39_06865 | Not Available | Negative | 1397062 - 1397751 | 25716.0 |
| phosphate signaling complex protein phou | FAP39_06870 | Not Available | Negative | 1397770 - 1398483 | 27040.7 |
| phosphate abc transporter atp-binding protein | FAP39_06875 | Not Available | Negative | 1398497 - 1399294 | 29325.0 |
| phosphate abc transporter permease psta | FAP39_06880 | Not Available | Negative | 1399312 - 1400655 | 48111.4 |
| phosphate abc transporter permease subunit pstc | FAP39_06885 | Not Available | Negative | 1400652 - 1402130 | 52405.1 |
| phosphonate abc transporter substrate-binding protein | FAP39_06890 | Not Available | Negative | 1402202 - 1403254 | 37228.7 |
| two-component sensor histidine kinase | FAP39_06895 | Not Available | Negative | 1403381 - 1404421 | 38150.9 |
| gamma carbonic anhydrase family protein | FAP39_06900 | Not Available | Negative | 1404565 - 1405101 | 18575.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
