Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional alpha/beta hydrolase/osmc family protein | FAP39_06805 | Not Available | Negative | 1386607 - 1387845 | 44411.6 |
| hypothetical protein | FAP39_06810 | Not Available | Positive | 1388069 - 1388695 | 22326.5 |
| hypothetical protein | FAP39_06815 | Not Available | Negative | 1388771 - 1389127 | 12852.4 |
| type i glutamate--ammonia ligase | FAP39_06820 | Not Available | Negative | 1389268 - 1390674 | 52063.4 |
| p-ii family nitrogen regulator | FAP39_06825 | Not Available | Negative | 1390707 - 1391045 | 12183.7 |
| nad(p)h-hydrate dehydratase | FAP39_06830 | Not Available | Positive | 1391219 - 1392757 | 52950.6 |
| duf2314 domain-containing protein | FAP39_06835 | Not Available | Negative | 1392761 - 1393393 | 22887.5 |
| Trna-leu | Not Available | Not Available | Positive | 1393428 - 1393512 | Not Available |
| hypothetical protein | FAP39_06845 | Not Available | Positive | 1393620 - 1393805 | 6795.27 |
| integrase | FAP39_06850 | Not Available | Positive | 1393922 - 1394902 | 37238.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
