Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dsbe family thiol:disulfide interchange protein | FAP39_06755 | Not Available | Positive | 1375523 - 1376080 | 20001.3 |
| aconitate hydratase acna | FAP39_06760 | Not Available | Negative | 1376179 - 1378866 | 96836.0 |
| duf1223 domain-containing protein | FAP39_06765 | Not Available | Positive | 1379095 - 1379772 | 25014.9 |
| lauroyl acyltransferase | FAP39_06770 | Not Available | Negative | 1379769 - 1380680 | 33919.4 |
| dmt family transporter | FAP39_06775 | Not Available | Negative | 1380677 - 1381507 | 30094.0 |
| flagellar motor switch protein flig | FAP39_06780 | Not Available | Negative | 1381652 - 1382713 | 37554.8 |
| hypothetical protein | FAP39_06785 | Not Available | Negative | 1382773 - 1383315 | 19928.7 |
| adenylosuccinate lyase | FAP39_06790 | Not Available | Negative | 1384132 - 1385436 | 48498.3 |
| hypothetical protein | FAP39_06795 | Not Available | Positive | 1385628 - 1386200 | 20562.0 |
| hypothetical protein | FAP39_06800 | Not Available | Positive | 1386213 - 1386494 | 10296.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
