Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr00730 family rossman fold protein | FAP39_06655 | Not Available | Negative | 1352673 - 1353224 | 20071.2 |
| lysm peptidoglycan-binding domain-containing protein | FAP39_06660 | Not Available | Positive | 1353324 - 1354514 | 42107.1 |
| abc transporter atp-binding protein/permease | FAP39_06665 | Not Available | Positive | 1354631 - 1356451 | 66955.3 |
| efflux rnd transporter permease subunit | FAP39_06670 | Not Available | Negative | 1356571 - 1360347 | 136672.0 |
| efflux rnd transporter periplasmic adaptor subunit | FAP39_06675 | Not Available | Negative | 1360344 - 1361603 | 44373.5 |
| hypothetical protein | FAP39_06680 | Not Available | Positive | 1361810 - 1362490 | 24307.8 |
| quinoprotein | FAP39_06685 | Not Available | Positive | 1362532 - 1363821 | 45041.5 |
| ribosome biogenesis gtpase der | FAP39_06690 | Not Available | Positive | 1363870 - 1365327 | 53883.1 |
| fatty acid desaturase | FAP39_06695 | Not Available | Positive | 1365471 - 1366460 | 37919.8 |
| hypothetical protein | FAP39_06700 | Not Available | Negative | 1366636 - 1367274 | 23288.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
