Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction resolvase ruvx | FAP39_06605 | Not Available | Negative | 1342681 - 1343163 | 17520.2 |
| c-type cytochrome biogenesis protein ccmi | FAP39_06610 | Not Available | Negative | 1343160 - 1344386 | 44195.6 |
| sarcosine oxidase subunit beta family protein | FAP39_06615 | Not Available | Positive | 1344566 - 1345813 | 44853.8 |
| sarcosine oxidase subunit delta | FAP39_06620 | Not Available | Positive | 1345828 - 1346157 | 12487.7 |
| sarcosine oxidase subunit alpha family protein | FAP39_06625 | Not Available | Positive | 1346154 - 1349165 | 108471.0 |
| sarcosine oxidase subunit gamma | FAP39_06630 | Not Available | Positive | 1349158 - 1349724 | 19910.7 |
| hypothetical protein | FAP39_06635 | Not Available | Positive | 1349885 - 1350412 | 19268.3 |
| hypothetical protein | FAP39_06640 | Not Available | Positive | 1350554 - 1350982 | 15416.4 |
| superoxide dismutase | FAP39_06645 | Not Available | Positive | 1351095 - 1351694 | 22002.6 |
| eama family transporter rard | FAP39_06650 | Not Available | Positive | 1351816 - 1352730 | 32755.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
