Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin carboxylase | FAP39_06505 | Not Available | Positive | 1321825 - 1323279 | 54667.8 |
| hypothetical protein | FAP39_06510 | Not Available | Negative | 1323285 - 1323644 | 13661.0 |
| hypothetical protein | FAP39_06515 | Not Available | Positive | 1323770 - 1324957 | 44268.8 |
| carbon-nitrogen hydrolase family protein | FAP39_06520 | Not Available | Positive | 1324963 - 1325874 | 33878.8 |
| hypothetical protein | FAP39_06525 | Not Available | Positive | 1325923 - 1326441 | 18376.7 |
| gnat family n-acetyltransferase | FAP39_06530 | Not Available | Positive | 1326545 - 1327066 | 19237.2 |
| helix-turn-helix domain-containing protein | FAP39_06535 | Not Available | Negative | 1327058 - 1328029 | 36164.0 |
| hydantoinase b/oxoprolinase family protein | FAP39_06540 | Not Available | Positive | 1328275 - 1330026 | 62848.7 |
| hydantoinase/oxoprolinase family protein | FAP39_06545 | Not Available | Positive | 1330052 - 1332139 | 74718.9 |
| abc transporter atp-binding protein | FAP39_06550 | Not Available | Positive | 1332152 - 1332895 | 25929.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
