Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetate--coa ligase | FAP39_06455 | Not Available | Negative | 1309126 - 1311090 | 72308.2 |
| 3-hydroxybutyryl-coa dehydrogenase | FAP39_06460 | Not Available | Negative | 1311570 - 1312445 | 31331.7 |
| aldehyde dehydrogenase family protein | FAP39_06465 | Not Available | Negative | 1312450 - 1313880 | 50559.2 |
| acyl-coa dehydrogenase | FAP39_06470 | Not Available | Negative | 1313986 - 1315200 | 44222.0 |
| 4-aminobutyrate--2-oxoglutarate transaminase | FAP39_06475 | Not Available | Negative | 1315215 - 1316516 | 45604.7 |
| cupin domain-containing protein | FAP39_06480 | Not Available | Positive | 1316642 - 1317223 | 21074.9 |
| coa transferase | FAP39_06485 | Not Available | Positive | 1317278 - 1318384 | 39331.7 |
| trap transporter large permease subunit | FAP39_06490 | Not Available | Negative | 1318470 - 1319789 | 46807.7 |
| trap transporter small permease subunit | FAP39_06495 | Not Available | Negative | 1319838 - 1320413 | 21451.5 |
| abc transporter substrate-binding protein | FAP39_06500 | Not Available | Negative | 1320413 - 1321432 | 36877.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
